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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV10205791 hCoV-19/cat/USA/WA-DDL21-12930-3/2021 EPI_ISL_7845315 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-08-18 Felis catus 29487 2021-12-19 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Washington Animal Disease Diagnostic Laboratory Rebecca Wolking University of Minnesota Genomics Center 27328 92.68
OEAV10748966 hCoV-19/cat/USA/CA-21-035224-002/2021 EPI_ISL_7974436 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-15 Felis catus 29785 2021-12-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29711 99.75
OEAV10748967 hCoV-19/cat/USA/IA-21-036031-001/2021 EPI_ISL_7974437 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-10 Felis catus 29828 2021-12-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Iowa State University Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29828 100.00
OEAV10748968 hCoV-19/cat/USA/TX-TAMU-250-20-031373-004/2020 EPI_ISL_7974438 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-10-15 Felis catus 29834 2021-12-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Wisconsin Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29834 100.00
OEAV10836129 hCoV-19/cat/Latvia/411/2020 EPI_ISL_8099231 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2020-12-17 Felis catus 29871 2021-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 29871 100.00
OEAV10836130 hCoV-19/cat/USA/OH-21-037782-001/2021 EPI_ISL_8145732 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-12-10 Felis catus 29792 2021-12-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Antech Diagnostics Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29792 100.00
OEAV4725330 SARS-CoV-2/Cat/ESP/B.1.617.2/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes OL336792 RNA viruses Severe acute respiratory syndrome coronavirus 2 Spain 2021-10-03 Felis catus 29831 2021-11-03 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Barroso-Arevalo,S., Sanchez-Morales,L. and Sanchez-Vizcaino,J.M. Animal Health, Complutense University of Madrid 29831 100.00
OEAV5062958 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2_Cat_K8 genome assembly, complete genome: monopartite OV078965 RNA viruses Severe acute respiratory syndrome coronavirus 2 Germany 2021-10-28 Felis catus 29827 2021-11-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health, Institute of Diagnostic Virology, Suedufer 10, Greifswald - Insel Riems, Mecklenburg - Western Pomerania 29678 99.50
OEAV8795424 hCoV-19/cat/USA/NJ-21-028949-001/2021 EPI_ISL_5781757 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-23 Felis catus 29789 2021-10-30 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID University of Pennsylvania School of Veterinary Medicine Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29789 100.00
OEAV8795425 hCoV-19/cat/USA/WY-21-028404-001/2021 EPI_ISL_5781756 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-09 Felis catus 29779 2021-10-30 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IDEXX Reference Laboratories Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29779 100.00
OEAV9134633 hCoV-19/cat/USA/ID-21-032645-001/2021 EPI_ISL_6088089 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-16 Felis catus 29789 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IDEXX Reference Laboratories Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29789 100.00
OEAV9134634 hCoV-19/cat/USA/IN-21-032644-001/2021 EPI_ISL_6088086 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-17 Felis catus 29792 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IDEXX Reference Laboratories Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29792 100.00
OEAV9473466 hCoV-19/cat/Brazil/INCA-Vet176/2021 EPI_ISL_6470123 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2021-02-01 Felis catus 1534 2021-11-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratório de Biologia Molecular, Instituto de Pesquisas Biomédicas, Hospital Naval Marcílio Dias Juliana Aparecida Souza da Paz; Fábio Luís Lima Monteiro; Filipe Romero Rebello Moreira; Raissa Mirella dos Santos Cunha da Costa; Livia Ramos Goes; Juliana Domett Siqueira; Vinicius Figueiredo Vizzoni; Stephany Cavalcante Ferreira; Rafaela da Silva Caetano; Eduardo Siqueira; Karina Martins Cardoso; Sâmila Natiane Ferreira; Jéssica da Silva Oliveira; Luciana Moreira Miyashiro; Leonardo Bustamante de Luna Dias; Marcelo Alves Soares; Amilcar Tanuri; Dirlei Nico; Shana Priscila Coutinho Barroso Programa de Oncovirologia, Instituto Nacional de Câncer 1495 97.46
OEAV9473467 hCoV-19/cat/Latvia/2560/2021 EPI_ISL_6204713 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-02-25 Felis catus 29893 2021-11-11 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 29878 99.95
OEAV9473468 hCoV-19/cat/Latvia/2561/2021 EPI_ISL_6204714 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-02-11 Felis catus 29903 2021-11-11 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 29889 99.95
OEAV9473469 hCoV-19/cat/USA/NJ-VSP3453/2021 EPI_ISL_6425547 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-22 Felis catus 29890 2021-11-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Lennon John K. Everett, Kyle Rodino, Andrew D. Marques, Elizabeth M. Lennon, Olivia C. Lenz, Shantan Reddy, Aoife M. Roche, Young Hwang, Scott Sherrill-Mix, Samantha A. Whiteside, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Arupa Ganguly, Mike Feldman, Brendan Kelly, Ronald G. Collman and Frederic Bushan Bushman 29890 100.00
OEAV9473470 hCoV-19/cat/USA/NJ-VSP3454/2021 EPI_ISL_6425548 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-29 Felis catus 29890 2021-11-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Lennon John K. Everett, Kyle Rodino, Andrew D. Marques, Elizabeth M. Lennon, Olivia C. Lenz, Shantan Reddy, Aoife M. Roche, Young Hwang, Scott Sherrill-Mix, Samantha A. Whiteside, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Arupa Ganguly, Mike Feldman, Brendan Kelly, Ronald G. Collman and Frederic Bushan Bushman 29890 100.00
OEAV9473471 hCoV-19/cat/USA/NJ-VSP3499/2021 EPI_ISL_6425549 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-22 Felis catus 29891 2021-11-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Lennon John K. Everett, Kyle Rodino, Andrew D. Marques, Elizabeth M. Lennon, Olivia C. Lenz, Shantan Reddy, Aoife M. Roche, Young Hwang, Scott Sherrill-Mix, Samantha A. Whiteside, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Arupa Ganguly, Mike Feldman, Brendan Kelly, Ronald G. Collman and Frederic Bushan Bushman 29891 100.00
OEAV9473472 hCoV-19/cat/USA/NJ-VSP3500/2021 EPI_ISL_6425550 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-29 Felis catus 29891 2021-11-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Lennon John K. Everett, Kyle Rodino, Andrew D. Marques, Elizabeth M. Lennon, Olivia C. Lenz, Shantan Reddy, Aoife M. Roche, Young Hwang, Scott Sherrill-Mix, Samantha A. Whiteside, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Arupa Ganguly, Mike Feldman, Brendan Kelly, Ronald G. Collman and Frederic Bushan Bushman 29891 100.00
OEAV9473473 hCoV-19/cat/USA/TX-TAMU-172-20-027713-002/2020 EPI_ISL_6639377 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-09-11 Felis catus 29830 2021-11-23 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Wisconsin Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29830 100.00
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